Function reference • mgcViz

All functions
`ALE()`	Generic function for Accumulated Local Effect (ALE)
`ALE(<gam>)`	Create Accumulated Local Effects (ALE) for GAMs
`check(<gamViz>)`	Some diagnostics for a fitted gam model
`check0D()`	Checking GAM simulated residuals or responses
`check1D()`	Checking GAM residuals or responses along one covariate
`check2D()`	Checking GAM residuals along two covariates
`fix.family.cdf()`	Getting the CDF of a gam family
`bamV()` `gamV()`	Fit a GAM model and get a gamViz object
`gamm4V()` `gammV()`	Fit a GAMM or GAMM4 model and get a gamViz object
`getGam()`	Convert gamViz object to gamObject
`getViz()`	Converting gam objects to gamViz objects
`gridPrint()`	Plotting plotSmooth objects on a grid
`l_bound()`	Add boundaries to smooth effect plot
`l_ciBar()`	Adding confidence intervals to barplots
`l_ciLine()`	Adding confidence intervals to effect plot
`l_ciPoly()`	Adding confidence band to effect plots
`l_clusterLine()`	Cluster and plot smooth effects
`l_coordContour()`	Adding coordinate lines
`l_dens1D()`	Adding density estimate to a plot
`l_dens2D()` `l_dens()`	Adding density estimate heatmap
`l_densCheck()`	Checking residuals conditional density
`l_fitBar()`	Adding barplot to effect plots
`l_fitContour()`	Adding fitted effect contour lines
`l_fitDens()`	Adding density strip of fitted effect
`l_fitLine()`	Add fitted smooth effect curve
`l_fitPoints()`	Adding points representing the fitted effect
`l_fitRaster()`	Adding raster representing the fitted effect
`l_glyphs2D()`	Adding glyphs to 2D plots
`l_gridCheck1D()`	Binning and checking GAM residuals
`l_gridCheck2D()`	Binning and checking GAM residuals
`l_gridQCheck1D()`	Checking sign of residuals along one covariate
`l_gridQCheck2D()`	Binning and checking QGAM residuals
`l_hist()`	Adding histogram to a plot
`l_points()`	Add points to plot
`l_poly()`	Add polygons to effect plots
`l_pvContour()`	Adding contour of p-values
`l_pvRaster()`	Adding raster or heat-map of p-values
`l_rug()`	Adding rug to margins of a plot
`l_simLine()`	Add simulated smooth effect curves
`l_vline()`	Adding vertical line to a plot
`listLayers()`	Lists available layers for plotSmooth objects
`mqgamV()`	Fit multiple QGAM models and get a mgamViz object
`plot(<ALE1D>)`	Plot 1D Accumulated Local Effects (ALE)
`plot(<fs.interaction.1D>)`	Plotting one dimensional smooth factor interactions
`plot(<gamViz>)`	Basic GAM plotting
`plot(<mgamViz>)`	Plotting multiple quantile GAMs
`plot(<mgcv.smooth.1D>)` `plot(<multi.mgcv.smooth.1D>)`	Plotting one dimensional smooth effects
`plot(<mgcv.smooth.2D>)` `plot(<multi.mgcv.smooth.2D>)`	Plotting two dimensional smooth effects
`plot(<mgcv.smooth.MD>)`	Plotting slice of higher-dimensional smooth effects
`plot(<mrf.smooth>)`	Plotting Markov random field smooths
`plot(<multi.ptermFactor>)` `plot(<multi.ptermLogical>)` `plot(<ptermFactor>)` `plot(<ptermLogical>)`	Plotting factor or logical parametric effects
`plot(<ptermInteraction>)` `plot(<multi.ptermInteraction>)`	Plotting parametric interactions
`plot(<ptermMatrixNumeric>)` `plot(<multi.ptermNumeric>)` `plot(<ptermNumeric>)`	Plotting numeric parametric effects
`plot(<multi.random.effect>)` `plot(<random.effect>)`	Plotting random effects
`plot(<sos.smooth>)`	Plotting smooths on the sphere
`plotDiff()`	Generic plotting of differences
`plotDiff(<mgcv.smooth.1D>)`	Plotting differences between two 1D smooth effects
`plotDiff(<mgcv.smooth.2D>)`	Plotting differences between two 2D smooth effects
`plotDiff(<sos.smooth>)`	Plotting differences between two smooths on the sphere
`plotRGL()`	Generic RGL plotting function
`plotRGL(<mgcv.smooth.2D>)`	Visualizing 2D smooth effects in 3D
`plotRGL(<mgcv.smooth.MD>)`	Visualizing a 2D slice of a smooth effects in 3D
`plotSlice()`	Plotting sequence of slices of 2D smooth effect
`postSim()`	Posterior simulation from a GAM object
`print(<checkGam>)`	Printing the output of check.gamViz
`print(<plotGam>)`	Printing the output of plot.gamViz
`print(<plotSmooth>)`	Printing plots of smooth effects
`print(<qqGam>)`	Printing the output of qq.gamViz
`pterm()`	Extracting parametric effects from a GAM model
`qgamV()`	Fit a QGAM model and get a gamViz object
`qq()`	Generic QQ plots
`qq(<gamViz>)`	QQ plots for gam model residuals
`qqnorm()` `qqplot()` `qqline()`	Quantile-Quantile Plots
`residuals(<gamViz>)`	Generalized Additive Model residuals
`shine()`	Generic shine function
`shine(<qqGam>)`	Shiny QQ-plots for GAMs
`simulate(<gam>)`	Simulating responses from a GAM object
`sm()`	Extracting a smooth effect from a GAM model
`zoom()`	Generic zooming function
`zoom(<qqGam>)`	Efficiently zooming on GAM QQ-plots
`zto1()`	Constructing a decreasing function from (0,1) to (0,1)

Reference

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